Sarah Djebali

Courses

Supervision

Courses

I have given the following courses:

Years Number of hours Topic Audience Location
2024 2h Functional annotation databases and their interrogation INSERM workshop attendees Bordeaux
2024 2h Causal variant fine-mapping using functional annotations INSERM workshop attendees Bordeaux
2022 12h Linux and the command line Bioinformatics Master UPS, Toulouse
2021-2022 4h Functionnal annotation and common diseases Bioengineering Master UPS, Toulouse
2012-2020 72h Theoretical and practical course about ENCODE and/or the analysis of RNA-seq data Researchers and engineers Pasteur/EMBO/CRG/SIB
2011 8h Theoretical and practical computer science courses (UNIX and programming) Researchers in Biology CRG, Barcelona
2002-2006 280h Theoretical and practical computer science and bioinformatics courses License and Master students Evry University

Supervision

During my career, I have (co-)supervised the following people:

Name Project Level Supervision ratio Dates
Victor Lefebvre Divergence of duplicated genes' cis-regulatory landscape M2 33% January to July 2024
Océane Carpentier Knowledge graphs to identify miRNA/gene relationships M2 50% January to July 2024
Martin Racoupeau Comparison of methods for microRNA identification M2 50% January to July 2023
Zoé Gerber Identification of causal variants in coronary artery disease M2 100% September 2022 to June 2023
Tess Azevedo Gene co-expression networks and module identification in livestock species M1 33% June to October 2022
Smahane Chalabi Impact of the maternal diet's fiber content on the transcriptomes and epigenomes of fetus and piglets Postdoc 50% October 2021 to March 2023
Tristan Hoellinger Genome-wide identification of enhancer/gene relationships Master 100% September 2020 to February 2022
Pierre Guenzi-Tibéri Development of a Nextflow pipeline for quantifying the expression of small RNAs from high-throughput sequencing data M1 50% June to August 2021
Claire Martin Combining enhancer/gene relationships and genetic data to identify new variants and genes associated to Parkinson's disease Engineer 50% September 2020 to March 2021
Camille Mestre Genome-wide identification of enhancer/gene relationships M2 60% January to July 2018
Matthew Smart Comparison of chromatin accessibility and chromatin structure data L3 70% March to September 2017
Nikki Gentle Transcriptional Signatures of Viral Control in HIV-1 Infected South African Women PhD student 30% January to July 2014
Alessandra Breschi Human and mouse transcriptome comparison PhD student 50% November 2012 to October 2015
Bernardo Rodríguez Martín Chimeric transcript identification in vertebrate genomes M2 and PhD student 100% and 30% January 2013 to October 2016
Emilio Palumbo Robust pipeline development for the analysis of HTS functional data Engineer 80% November 2012 to October 2015
Matthieu Muffato Development of a user interface for the Exogean gene identification program M1 80% April to July 2006
Charles Vejnar Development of a pseudogene detection module for the Exogean gene identification program M1 80% April to July 2005
Khaled Yahiaoui Improvement and evaluation of Exogean, a eukaryotic gene identification program M2 80% January to July 2005