Sarah Djebali

Courses

Supervision

Courses

I have given the following courses:

Years Number of hours Topic Audience Location
2025 2h Functional annotation databases and their interrogation Purpan Bioinfo group Toulouse
2024 2h Functional annotation databases and their interrogation INSERM workshop attendees Bordeaux
2024 2h Causal variant fine-mapping using functional annotations INSERM workshop attendees Bordeaux
2022 12h Linux and the command line Bioinformatics Master UPS, Toulouse
2021-2022 4h Functionnal annotation and common diseases Bioengineering Master UPS, Toulouse
2012-2020 72h Theoretical and practical course about ENCODE and/or the analysis of RNA-seq data Researchers and engineers Pasteur/EMBO/CRG/SIB
2011 8h Theoretical and practical computer science courses (UNIX and programming) Researchers in Biology CRG, Barcelona
2002-2006 280h Theoretical and practical computer science and bioinformatics courses License and Master students Evry University

Supervision

During my career, I have (co-)supervised the following people:

Name Project Level Supervision ratio Dates
Victor Lefebvre Divergence of duplicated genes' cis-regulatory landscape M2 and now phD 33% Since January 2024
Amel Benarbia Characterizing genomic rearrangements at transcribed loci following double stranded breaks M2 50% January to July 2025
Mathis Lafitte Differential analysis of mirnas from array experiments M1 100% June-July 2025
Juliette Caverzan Implementing the score 2 of cardiovascular risk in the next 10 years L2 100% May-June 2025
Océane Carpentier Knowledge graphs to identify miRNA/gene relationships M2 50% January to July 2024
Martin Racoupeau Comparison of methods for microRNA identification M2 50% January to July 2023
Zoé Gerber Identification of causal variants in coronary artery disease M2 100% September 2022 to June 2023
Tess Azevedo Gene co-expression networks and module identification in livestock species M1 33% June to October 2022
Smahane Chalabi Impact of the maternal diet's fiber content on the transcriptomes and epigenomes of fetus and piglets Postdoc 50% October 2021 to March 2023
Tristan Hoellinger Genome-wide identification of enhancer/gene relationships Master 100% September 2020 to February 2022
Pierre Guenzi-Tibéri Development of a Nextflow pipeline for quantifying the expression of small RNAs from high-throughput sequencing data M1 50% June to August 2021
Claire Martin Combining enhancer/gene relationships and genetic data to identify new variants and genes associated to Parkinson's disease Engineer 50% September 2020 to March 2021
Camille Mestre Genome-wide identification of enhancer/gene relationships M2 60% January to July 2018
Matthew Smart Comparison of chromatin accessibility and chromatin structure data L3 70% March to September 2017
Nikki Gentle Transcriptional Signatures of Viral Control in HIV-1 Infected South African Women PhD student 30% January to July 2014
Alessandra Breschi Human and mouse transcriptome comparison PhD student 50% November 2012 to October 2015
Bernardo Rodríguez Martín Chimeric transcript identification in vertebrate genomes M2 and PhD student 100% and 30% January 2013 to October 2016
Emilio Palumbo Robust pipeline development for the analysis of HTS functional data Engineer 80% November 2012 to October 2015
Matthieu Muffato Development of a user interface for the Exogean gene identification program M1 80% April to July 2006
Charles Vejnar Development of a pseudogene detection module for the Exogean gene identification program M1 80% April to July 2005
Khaled Yahiaoui Improvement and evaluation of Exogean, a eukaryotic gene identification program M2 80% January to July 2005